Web genetic software: 7-Apr-07. Haphazardly and sporadically updated by Dave McDonald, Dept. Zoology, University of Wyoming, Laramie, WY.
Download ClustalX 2.0 Freeware software - Softlookup Downloads : Category: Publisher: Last Updated: 4/27/2007 Requirements: Not specified License: Freeware Operating system: Mac OS X Hits: 866 File size: 7.18 MB Price: Not specified ClustalX 2.0 Description: ClustalX is a general purpose multiple sequence alignment program for DNA or proteins. ClustalX produces biologically meaningful multiple sequence alignments of divergent sequences. Sight Warrior is a proven learning tool designed to help guitarists and bass players memorize the fretboard and improve their sight reading. Demo Software for the creation of grades charts used for classroom tests and written examinations, which are evaluated by means of a points rationing scheme. Demo Practica Musica is the great Ars Nova's award-winning music theory and ear training software, has received its most significant upgrade to date: Version 4.
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ClustalW2, ClustallW, and ClustalX are general purpose, multiple sequence alignment tools. Multiple alignments of protein sequences can identify conserved sequence regions. This is useful in designing experiments to test and modify the function of specific proteins, in predicting the function and structure of proteins and in identifying new members of protein families. Clustal is a general purpose multiple sequence alignment program for DNA or proteins.
ClustalW is the command line version and ClustalX is the graphical version of Clustal. The current version is ClustalW2. It produces biologically meaningful multiple sequence alignments of divergent sequences by calculating the best match for the selected sequences and lining them up so that the identities, similarities and differences can be seen. Evolutionary relationships can be seen via viewing Cladograms or Phylograms.
Higgins D., Thompson J., Gibson T., Thompson J.D., Higgins D.G., Gibson T.J.(1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Higgins, D.G., Thompson, J.D. And Gibson, T.J. (1996) Using CLUSTAL for multiple sequence alignments. Methods Enzymol., 266:383-402. Nucleic Acids Research 22: 4673-4680.
Larkin M.A., Blackshields G., Brown N.P., Chenna R., McGettigan P.A., McWilliam H., Valentin F., Wallace I.M., Wilm A., Lopez R., Thompson J.D., Gibson T.J. And Higgins D.G. (2007),ClustalW and ClustalX version 2, Bioinformatics 2007 23(21): 2947-2948. Using ClustalX for multiple sequence, Tuimala, J (tutorial available at ).
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